Scaffold Ga0334977_0005746

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0005746
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7067
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F005775	Metagenome	390	N
F006697	Metagenome / Metatranscriptome	366	Y
F008615	Metagenome / Metatranscriptome	330	N
F025444	Metagenome	201	N
F026828	Metagenome	196	Y
F030991	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0005746_125_313	F030991	N/A	MILKYLGCDKKYFRYELYDGERMELYVETKLSARATAKLLFCNFGIKHIVLKIYNRTYGVKT
Ga0334977_0005746_2466_2582	F026828	N/A	MITEELIGNAIAFLAGWILKRPDFVQKILSKLFAKKDK
Ga0334977_0005746_2876_3208	F008615	N/A	MNTPNTFGAKMFGRFMRKGWHISFTDSYQDRVCVIPPDRLDAKHLFGIYIPVLRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFASWIGDLLRNPEKFT
Ga0334977_0005746_3377_3772	F005775	AGGA	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRDLFIMASGSVTRYVPKSEHNSQAPMGFFNLQMGYYNKISIHTRDFAQLADVFEQITLFLKNNSGKLDQVVTKELDTYTTHHLKNLLNTNEQP
Ga0334977_0005746_4530_5165	F025444	N/A	MYLQLAGLEPLDTAENPMAPGATPYKYKNYYLGQSQDIILPDALFPPNVEGYAAALKSVADLYGKFSKGKKTPAAVVKTPGMGVDPATLMLIAKGIYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQLSDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTALPGWVLPAALGLGAVLILRGRK
Ga0334977_0005746_5947_6501	F002259	N/A	MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSITTAATNFTFFKGASQRAFPLTNVGANGNQFQVDEALLVEKVGFFIPSAADGIAYTGLAGISVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGTIGSSVIDLEGVGILIPPQVEYYVVAKTYSGTTRVAETTRLGCYLFGTGALLNFNTTI
Ga0334977_0005746_6504_7043	F006697	N/A	MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFQFFTNFAGKTEFQSNLTTNKLDSAESMVIKSVQIIMNSATSNLSDHLNLNITVGNQVVLKDFDPSFNATSRGLAFDRLHSGFNSGTNLEIRLLTDIVIPPQVNFKAELTIGNALIAVNDDVTIVFKGYGRIFSAGNSF