Scaffold Ga0334977_0004241

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0004241
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8194
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F054875	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0004241_1620_2030	F023109	N/A	LLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIMQGRGFIYVDSHLRGAIVAYKSSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDERAKEMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE
Ga0334977_0004241_2063_2713	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFANLGALLSVGDVQRDIKATSDDMTIQLTGIDPTNVALILSSDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNTDARTRVATCSISCSSMRRVLENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTFFDFGAPPKTQTQASETTVTSDYQNSKEQP
Ga0334977_0004241_2710_3306	F008619	AGG	MSFQTIFEIQQSMTVNNRRMVGQQVARSGYITVAQYLTAVPWVFTIQPHAYLYYPQVRDVIQTIDNLDRQLPEYITFTGANLGWFTEMRGTATTATLNGAPVANTQTLALTSNGTFKAGDFIMVGGYVYKVTADSAGSSVSINRPLIGNPASGATVLLGNNVSFNVVAESCPTYTLNPMTDGAFVQWDSPFVFREYIT
Ga0334977_0004241_5670_6152	F054875	AGGA	MTKLSSAFGEKYQAKRKDLLTRSFVLNGHTFKVRIPLMIESDAIYKKVSNPDEETVDKIYQEITAPLRQFEGNQNEDFEFTDTDILVEKRSMREAAKNKAITEARITEFFKLLVPEMEGVTLEDLTYADIEEEFPIAVQMLIVEKIGEVISPTYREARGN