Scaffold Ga0334977

Basic Information
Taxon OID	3300033978 Open in IMG/M
Scaffold ID	Ga0334977_0004020 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033978 Open in IMG/M

Scaffold ID

Ga0334977_0004020 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8412
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (19.05%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8412

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (19.05%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030086	Metagenome	186	N
F060615	Metagenome	132	N
F076897	Metagenome / Metatranscriptome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0004020_3045_3683	F076897	N/A	MNNYLLRNNFIMTKKIVRLTESDLERIVRRVIKESMGVGFMSGEPNGLKIKRMETKEQDATSVSTPDQTKPLLDKSMLVVNQKLPLDRKTLTSMASALKDFDKKLIGGTPYEALQGIWGDDLINSFNKSIATLGYQLGSAGGYKAMMDGRPFGNIMSMAALSAMVNDLLLLRDGLTYLAQVKAGMKVMPSDAVKKALPFFKEFSQKNQLGLA
Ga0334977_0004020_712_2511	F060615	N/A	MYKIFLQEGKKEDAIQKVKEMFSSPEDAEMIDKIFDATSSLGTKFIPFVENETKRYLIDQNTDINDFINLLVNRIRSFIKNNAKITSEVIGTTKELWDGVESRAFPKLDVVLNAPKDINSYNIDTLGYLTQALSMISSKKEKEREAKKEAERVFEDGDVIGIRAITHNASCYYGSGTRWCTAGQQPDYFNKYTKDGKLYYFIDKSNRRQKIALYIKDGDPTVYDAADTGHDVDFLYHVYPEVENFVIEKLLGGGKVKSGFERIKDGTISSWNADRVDPLITSYNRDNEDNVTLNLDFNGRDNDYFDLFEWNEGDGDRMYLDISLSSYGTGEIFDSYYGEEEWKEGYMYSYFDDEQMKRLQTYMKIINPKLYECTLGLKEYGNDDCRIKVSEFLSKTFENAVDNIISEYTYDMNADIEQGIKEYLERDYSNMFAEYGLPMTGTFYKKTVKLNDLIKTYQKYNPKFNVGIYGLLRRIINLENIDPPSIADSVYEFRTNNYEYSSTNSAIEKLLDTMEETINESENITGNYVDHYDFIKKLGGFDEWIDMPGDKRYMLKITDLDMEDDRVTFALQNRETSDFKKMRLPFEKFKDFIYNLQLF
Ga0334977_0004020_7590_7877	F030086	N/A	MKTLLKDPRLYFSLWIVLSIILAITLGACKQKPLIEKGDVVEKFVIDSMVQLPPHSTIELDRKYKYFMSDSSEFTSLRKYNIGDTITYVYKKQGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334977_0004020

Overview

Ecosystem & Geography

Associated Families

Sequences