Scaffold Ga0334977_0003061

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0003061
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9634
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F030991	Metagenome / Metatranscriptome	183	N
F036110	Metagenome / Metatranscriptome	170	N
F051646	Metagenome	143	Y
F079602	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0003061_3133_3321	F030991	N/A	MILKYLGCDKKYFRYELYDGDRMELYVETKLSARATAKLLFCNFGIKDIAIKIYNRTYGVKT
Ga0334977_0003061_4423_5268	F051646	N/A	MVGLFYIYLPMSWQIPTQVELDIISGKAKYQTFQTGNGGQSILQVPPNSYAVIFGYDFSPAGGGFKSLISMLQFPNVYINSASIRFFETQQISFYTGTDFYPFIHHVDVKSVLAPRQWDETNPASVLVSDYRVMEEIDNTPIARQVYITSPNDVTITHGLIQTATPATTGAIPVTSRTPGFLTYGGSGQLIQAQTNYGPGGTPLQFMQPSPKDFQDFGLGLLPGNPDNQAFATPDATNGLLAANAHLLAIGGDTFTQAAAANYYLCLHYALYSKTIPEQRG
Ga0334977_0003061_5723_6262	F006697	N/A	MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFTFFTNFAGKTEFQSNLTTNKLDSAESMVIKSVQIIMNTETSNLSDHLNLNITVGNQVVLKDFDPSFNATSRGLAFDRLHSGFNSGTNLEIRLLTDIVIPPQVNFKAELTLGNALIAVNNDITIVFKGYGRIFSAGNSF
Ga0334977_0003061_6265_6819	F002259	N/A	MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSITTAATNFTFFKGASQRAFPLTNVGANGNQFQVDEALLVEKIGFFIPSAADGIAYTGLAGISVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGAIGSSVIDLEGVGILIPPQIEYYVVAKTYSGTTRVAETTRLGCYLFGTGALLNFNTTI
Ga0334977_0003061_807_974	F036110	N/A	MEIWLFAATVAVSIVGFLISRELNRTGEELKQLRQDVFRLSVDLAKLQTRLDDLI
Ga0334977_0003061_9246_9512	F079602	GGAG	MASGSVTRYVPKSEHNNQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNSGKLDQVVTKELDTYTTHHLKNLLNTNEQP