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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033978 Open in IMG/M |
| Scaffold ID | Ga0334977_0001474 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13777 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (100.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018127 | Metagenome / Metatranscriptome | 236 | Y |
| F029017 | Metagenome / Metatranscriptome | 189 | Y |
| F031754 | Metagenome / Metatranscriptome | 181 | Y |
| F074372 | Metagenome | 119 | Y |
| F076850 | Metagenome | 117 | N |
| F102503 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334977_0001474_11416_11790 | F018127 | GGAG | MAKQKDNWIPWVIIGGLAFYVFSQQPKEGGDPKPAGVTAVVRSTIPSIRAAYKKAFLDAAAKIESGEIKDQEQWTKFIEENAGAKRVEAMNKVYTAIDELKLPVTFAGKEKELAEINRQIAGAW |
| Ga0334977_0001474_12072_12314 | F029017 | AGGA | MDELDFVSWKLVQLVLWAGPFGVGAFLAVCFFAGYFLGLKVSRLKRSKPMGNVKMDHIKYDILPDGTLGPGDNRGLEDPE |
| Ga0334977_0001474_13280_13702 | F031754 | GAGG | MNEKGGPVIMVVLLLGLFWFCSEPAKDPTQCDLMDTTPLIEEVATVKESFTVEPIDPQPSPSDKHEKTKREILIFVSANCPPCEKWKRCEMQRFMDAGWSVGIVEVHSYELTPTFEIESGDKKATIKGYTTLEQAAEEVR |
| Ga0334977_0001474_3274_3441 | F076850 | GAG | MNPYEPPDDESQLDRIERKIDRLNGEFLTVLILGAGFGAAVLILLEVLRANGWKF |
| Ga0334977_0001474_7786_7938 | F074372 | AGG | MTDDEKTRKLRDKVYRLELRVKLLQERNKELRQWITQLTNKNHPARRAGK |
| Ga0334977_0001474_8983_9183 | F102503 | GAGG | MTKRKNISQPKEVWAAWDRQAAAMDMTLSGLIFEAMNEHLGLFLTRKTKRRPKSKPVAPKRRRGKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |