Scaffold Ga0334977_0000760

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0000760
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18836
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031374	Metagenome / Metatranscriptome	182	N
F044938	Metagenome	153	N
F065715	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0000760_1396_1791	F044938	N/A	MSDRILVVTSPDDTLLQGIRIVHVELTEEHSAIVSNALMQATLPHTIINYVWKMGDPIAWLMDKIVKGDLIIFNASPENNGAIELIIGWVAAQPRSYYFGNLKDLHMVNDRAIYSVEEILTLLEKVSNHHE
Ga0334977_0000760_16878_17045	F065715	N/A	MYKAQFKRSNPYESWTTIGHYGNEQAAIAAALSYKNKGMLLVRVTDKNGGIVYTG
Ga0334977_0000760_3265_3633	F031374	N/A	MNTSTNAQTINIENPKFYPETNGPLLEQILNISFGWFKGLDADQKDAYYSSLILALEEVQPGQFSRWYKNNASGTVRVAWQFPRNGALCKRLHVSVIAHNMQKDLQTTACFNEVDNRWHWSS