Scaffold Ga0334977_0000642

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0000642
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20889
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (41.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001780	Metagenome / Metatranscriptome	635	Y
F010765	Metagenome / Metatranscriptome	299	Y
F021297	Metagenome / Metatranscriptome	219	Y
F028807	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0000642_10009_10389	F001298	N/A	MSLYGTEFLNDAKEMVADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYMERTQYSVRLPAVTASWSQPDGSMGASAALLSAGVPIASLGQGKKIVAGGKTVRITSQTYKPGSAWITLVVIDDNQ
Ga0334977_0000642_11368_11802	F001055	N/A	MGTKSIRHIVEATLATYLSTQTGLTAVTFLTGDSAATQTLPKAVVLCDSARAPGDLPEGLGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDATCYDVIIGSEDEGIDERSWATAFSFDVLVVLPAA
Ga0334977_0000642_16553_16873	F021297	N/A	MSCPNTVTISRGNSFACVFSWTPGASGPANLLTTTLSSTFEDKQFNQYQMTVTKAGDGLSFTVAYPGSTADWAIGLGRWDIKFVFPGSSVTRSEIFRVNVIDSVTV
Ga0334977_0000642_19048_19248	F028807	AGG	MSITTYRITMTGATLSDPYAFLQAVFPQRNGEPASSDGASVTVTFDTPQTPVDLGPLVKVETVVTA
Ga0334977_0000642_20399_20728	F010765	N/A	VSAALPQPPSPDEIPVEARDIGMGILIGSVSWLVRYFCSSEKQSLGYILRRTATAGLTSLLVGLGTKGYFSSEALAFAAAGCAGYAAPELSDALLARIKAMKGKIPPKG
Ga0334977_0000642_2773_3300	F001780	N/A	VTKASINDLSAPGKEAKSFDAWFFSQPKKLQEKMRENGVLPYREMSQSRHVFQVDANHPAWSTRDGDNLRKETEAFISRDHVGVMLKGFIDALAATNNFTWRRHVETVRWALSLPGCLDSRTIGRMYGRSHFWLRSRAKEIQRAVNSDACGMFPHCNARRDKHKQARPRHTPEAR