Scaffold Ga0334977_0000608

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0000608
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21474
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (49.15%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004314	Metagenome / Metatranscriptome	444	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007569	Metagenome / Metatranscriptome	348	Y
F013172	Metagenome / Metatranscriptome	273	Y
F027765	Metagenome / Metatranscriptome	193	Y
F032934	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0000608_11240_11365	F004898	GAGG	MDLSELIDELREIAMYESDPQDWMGYLENDDYWVPDSELAY
Ga0334977_0000608_13978_14151	F032934	N/A	MMIMTTHTKPIFIKQFANRWYLVWTDTNRTIASFATEFEAYAARKYMIEYNKNGGIK
Ga0334977_0000608_14172_14306	F013172	GGA	MNDATNRRIDKLMGEGVKIDTATHEGRKTIGYNYLELALDESEE
Ga0334977_0000608_14683_14892	F000744	GGA	MTMIEANVQLNVHEIGVILSALQELNLREENRIAREYGSVPALYNKLYTVFEQMDTSGTVLRNDVVPSF
Ga0334977_0000608_14925_15188	F002243	GGAG	MTTFPTLQSKDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYTETGDNSDLPQLGNPFYGAC
Ga0334977_0000608_15483_15665	F027765	GAG	MNDEDITQFLKAFSDFMKHSEEQIDSFQKWEEAKNYTDLFYEQKAAELEITVDYYIQEFV
Ga0334977_0000608_18603_18755	F004314	N/A	MYDDYDLDYTYASDYSYDLEEYYALDARELDEDYARDGQDYEGLAYRHYA
Ga0334977_0000608_531_716	F003331	N/A	MTEKDKIFYNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLKIAKWTTFDTEKLKPSGI
Ga0334977_0000608_5521_5682	F007569	GGAG	MNFTPEQYKLIFTAVRRYQFEKTILDSKEYHECGEILDELFDSVYTQRAEQPT
Ga0334977_0000608_5682_5855	F004546	GAG	MDYTEEFPFDQFPWKLVYKDGNETRKCYFQSEDHRKKHIERYKLKKKDIKLSYKFEE
Ga0334977_0000608_9163_9510	F000345	N/A	MTEKKNSWQEWWDSDACKQLQKANEEAKQRAVGKYFMLSEEDKLDMVQAICYIMCKAEEQGTSHRGLQDTLGIYPTGFWVDHLMDIHNALWSYYHDQKKEKELRDDLDNLDNFIK