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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033978 Open in IMG/M |
| Scaffold ID | Ga0334977_0000330 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31412 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (13.73%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003127 | Metagenome / Metatranscriptome | 506 | Y |
| F004474 | Metagenome / Metatranscriptome | 436 | Y |
| F053267 | Metagenome / Metatranscriptome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334977_0000330_19759_20277 | F004474 | N/A | MNYLLSVENLKKLGLIHQNTDTKILAVAIRRSQDIHVQPALGTPLYKALLLRVQNNTWSPTYLTLMNDYVVPCLVAYVDYRCALLLNEKLTNKTVGRVNDENISANNTPDTYVLRDQLLKDAQFYKERLIGFLMDDNGDNYPEYIDCCGSPSMCHEKVTKDNTGYSPLNWIV |
| Ga0334977_0000330_22630_23154 | F003127 | N/A | MTTGYNDRTCTNGKGGIKSVLLFPLGAVSGAIVSPLTNELTSITVTGETFLYKLKSNLSSYTAPVRVDKNNGTLWYEHELSMILASDSKELRAEIHLLAQNECVCLVENADGTIVALGLGEGLQVADANEYSSGVLKSDRKGHVIVMRGMENDEVPDVATNVYTSLLAQQSPSI |
| Ga0334977_0000330_4770_5177 | F053267 | GGA | MANKHRNIDKDELLQMAYNYCDYCIASTKEIATNSGVKQVKERHIPTVSYFLLHYLRREHFDFYKRDNWYHAMKDETHPLSDTIKAIDNDFNALARDIVANEGKGIFYAKNKLGMHDRQQVETRTVDKFDFDVND |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |