Scaffold Ga0334977_0000111

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0000111
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61120
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (62.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006586	Metagenome	369	Y
F008185	Metagenome / Metatranscriptome	337	Y
F032650	Metagenome / Metatranscriptome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0000111_41000_41332	F008185	AGGA	MPTLFRHAVNTNIGTTPVDVIQIPLGVRATVIGLNLANITDYDTAVVDVYIIDENSTQAHYIRGLSISPNSTAKIITQGEKLILPETAGIRIVSDTEDSIDVVVSYVEIS
Ga0334977_0000111_44342_44743	F032650	GAG	MIRNYENPEGTLSLVDSTNVTIPVKVFTSSTTGGPIGGGVTGRENAVTTIALCNTLAPDPADETTNSVTVNIYIVRSGLSYAAGNLVVSNLVIPAGETVFFSEERIVLASGDQIWVGTSQAAGLSVTVSVLAV
Ga0334977_0000111_46297_46569	F006586	N/A	MMKVESEQDFKQLREQFTAWRNRFPMFTHDVQRIEKIINQHITAHSKIMVLYRQTKNRGYLEKAQQEINAINTILNTVEKMELMSLLSRG