Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0064799 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0064799 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1965
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

1965

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F010071	Metagenome / Metatranscriptome	308	Y
F025427	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0064799_1107_1295	F007120	AGGAGG	MKKLIIVVSVACAVVAYYFGLRYFSGQDLGFTRASKYVRNLAKTLLHTEATAAQEAGAAPTA
Ga0314861_0064799_1359_1682	F002761	AGGA	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINAHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNVLMVAFVVPIWCRLSKLEGL
Ga0314861_0064799_1679_1963	F025427	N/A	LEKLLVSLETCPIQKKGLVLRLLKLYWKKLLFIALMLVLPGGLIALFLCVTVWALNWEKEMTAYFDATFRKWKKDNDVQCDFDGWLDEKGNDRV
Ga0314861_0064799_3_479	F010071	GAGG	MNRLANLALSVGETLLHESRRLLFGIALGAAKQFLGTPQPLGRGQLVLPRALQKKTVDGALLAGTRTEKEYAKFALKKGLPTEERPRALAVENAPHSVDDFSGIIKDGYGKGQKKLIYSGTGVIKVRGSCQLGKINVHAHEAEKAGLHYDFVAEGVDPH
Ga0314861_0064799_533_928	F005112	AGGAG	MSLVVKYKLFWAACVAALCGLAFWKNSKSYPGRSRLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARMDRRNRKEVAKPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0064799

Overview

Ecosystem & Geography

Associated Families

Sequences