NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0033004

Scaffold Ga0314861_0033004


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0033004 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3058
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F023143Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0033004_1421_1744F002261GAGMSDWPSIDAAANAVMQQTFGEPVMYQPVQAGQPVGDPLSITAVRHARVRDESGVMANAEEISVNPSDFPNPPAKGDWVTAWGAQYVVTTVRQPDAYGMLNLALLQRS
Ga0314861_0033004_1741_2244F003186N/AVINPKTILCEWIAVLQSCPDLVTAIGGNPANIRAFMEGLATDNNLRLAILQMPAGSILVAWSGTTPRRLTGGALHFAHHFALYLRAPEQNEAATYADLFWLLVSAKPANAESWQSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0314861_0033004_2241_2426F023143GGCGGVKEIMDYVFLESPNGEVKEVEATAAALTPLLVAGWHQVPAPPATGPKAATPAQEDQQHGQ
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