Scaffold Ga0314861_0028368

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314861_0028368

Scaffold Ga0314861_0028368

Overview

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0028368 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3380
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022810	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0028368_1346_1720	F022810	GGAG	MKEDPMDIRKYLGTLVLSVALLLASSIPSLAKNSRSVDLNHDVVLSGTTLPAGNYIVRWEAQSPRATVEFTRGHKVVLSTECKFEDRGKKYRSDMVVYHTAEDGTSTLNEIRFAGSSEVLVFNQ

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