Scaffold Ga0314861_0020395

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0020395
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4204
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0020395_1384_1572	F007120	AGGAGG	MKKLIIVVSVACAVVAYYFGLRYFSGQDLGFTRATKYVRNLAKTLLHTEATAAQEAGAAPAA
Ga0314861_0020395_1636_1959	F002761	AGGA	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESTLRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNVLMVTFVVPIWCRLSKLEGL
Ga0314861_0020395_1956_2255	F025427	AGGAG	MQPGELEKLLVSLATCPIQKKGLFWRLFKLYWKKLLFIALMLLLPGGLLVLFVCVTIWALNWEKEMTAYLDATFRKWKKDNDVQCDFDGWLDEKGNDRI
Ga0314861_0020395_2242_2442	F027079	AGGAGG	VIKSFLNLCLILFLDMLAYMVAIVAAAAVAWAALRGARWIFAVVQNAATALRGRWRKKEMYAHATR
Ga0314861_0020395_2439_2753	F016632	GGA	MFALIEISSAIGFLANWRSKVLNAKVSFFRQPNNRPSPFDKVLRGKAGRAFTRQDRLRLQLADGLVQLIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGGRPW
Ga0314861_0020395_2783_3241	F003859	AGGA	MDELTAQKRTVSESAGITVYLLPVANVCKSLKLSWQWRRLKWAVAAASEAAQGHEANGLRPGSQEFKTLYNEVAKKVQEYSHESGSPIGILKAKLPALCAIERLANPDPVAPQSKLGLTLGITIAAILGSVGIGALIGLATGMAHWIAHLFA
Ga0314861_0020395_3404_3874	F028392	GGA	MFKGLECDNGKSIHLKEDLPMPNTIAAIHLPEALRNGNSALVKLAGKVDSFSLMLQRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCRECCFFLGEPEEQVPGTTAGRIREDLTPQA
Ga0314861_0020395_735_1124	F005112	AGGAG	MSLAARYKLFWAACIAALCGLAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLLVLYAPALLLMYVVIWLTSPFKNKIVQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARMDKRNKLLKAA