Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0019022 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0019022 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4405
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4405

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F016632	Metagenome / Metatranscriptome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0019022_1535_1945	F028392	AGGAGG	MPNTIAVVHLPEALRNGNSALVKLAGKIDSFSLVLQRTPECQLKRQIEKEYHAMVFATRKEVRKYCPKYRYFAGEGILDFSTDCASGQLEPADLGKPPQPRRGRLCHECCFFLGEPEEQVPGTTVGEALKQLAPVA
Ga0314861_0019022_2108_2566	F003859	AGGAG	MDGLNAQKGTKSDGVRITDYLLPVANFCKSIKLGWQWRRLKWALAAASEAAQGHEANGMRPGSQEFKTLYNEVAKKVQGYSHESGDPIDTLKAKLPALCAIERLANPDPAVPQNRLGLALGIIIAAALGSIGIGALIGLATGMAHWIAHLFA
Ga0314861_0019022_2578_2910	F016632	AGGAGG	MTGILETFALVEIGSAIGFLASWRNKVLKARVNFFRQPNHKPSPFDKVLRGKAGRAVTRQDRLRLQLADGLVQLIRKLVQYDAFRQVVRGLALAHSPMRQALRKKGERPW
Ga0314861_0019022_2907_3107	F027079	AGGAG	VIKAFLNLCLVLFLDTLAYMVAIVSAAAVMWAALCGARWIVASLRNAAVALQTRQRKKERYAHAPR
Ga0314861_0019022_3329_3658	F002761	AGGTGG	MVFTPSSTGSFTAGAVFWSMVWAGLGKVNELARFVGFKRSKPRESALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNVLMVTFVVPIWCRLSRLESRLS
Ga0314861_0019022_3722_3910	F039911	AGGAG	MKYTIAAVLAVVAAIAGYFGIRRLTHKDLGFTPVKRYATKLAKTLIHTEATAAQEAGAAPAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0019022

Overview

Ecosystem & Geography

Associated Families

Sequences