Scaffold Ga0314861_0017933

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0017933
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4583
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0017933_1160_1555	F005112	AGGAG	MSLAAKYKLFWAACIATLCGLAFWKNSKSYPSKPRLWRLGKSAIDTGLVLLLVLYAPALLLVYVVVWLTSPFKNKIMQSTAAFASILAVSHLAGVVFEAVAVLGVFAVDLVTGQVVARMDRRNRKQVAEAT
Ga0314861_0017933_2_226	F027079	N/A	EERRRTLVIKAFLNLCLILFLDTLAYMIAIVAAAAVAWAAVCGARWIFAGFQKAVMALRAGLRKERFEPAGEEV
Ga0314861_0017933_531_860	F002761	AGG	MTFTPSATSSFTAGAVFWSMVWAGLGKLDELARFVGFQRSKPRESALRWINSHKVITLTATEVVNYSVHGISSPLGVTFALGGTIVNVLMVTFVVPIWYRLSRLESRLS
Ga0314861_0017933_923_1102	F039911	AGGAG	MKYTIAVLLSVVAAAAGYFGLRRLTNKDLGFTPVKRYATKLAQTLIHTEATAAQEAGVA