Scaffold Ga0314861_0005952

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0005952
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9958
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0005952_1974_2375	F028392	AGGAGG	MPKTIAAIHLPEALRSGNSALVKLAGKIDSFSLVLQRTPECQLKRQIEKEYHAMVFATRKEVRRYCPKYRYFAGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCHECCFFLGEPEEESAQTTTLPALVTAA
Ga0314861_0005952_2841_5957	F057060	AGGAGG	MPNHEELYFTPDINKPHQKWSVLEDPERPGRRPIFRHYRQPGEKPDARTSFGFSELSPVLEHYAAKAGVEYSRISLGRQSDSFDLALALVQSGLGLEIPGDGTWYPVIPWVRDDGFCAVLMREPVPYKEACHLFGFDIPAAKPGVPKRIKRHLARGRTALFGSEAGVRQLNEHDFVHRVILADGVKSFETAVYDPGARWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPSGQIKAHCLIWDVAYDLVVFDIKKELRACNGEAYFSVLNELHASPANLDVQTASNLDLAKVRDQKLIQYLSQEFACDVFEMMRDDERVKEEIGFYNPDGWVDEEGNLVMNENRWKLRRMYAAGLPAMQFRHCRDALYRTQMESPQNSDPDRFRICFREPKDLMTVQPQELAGAAVRKYIFPEPFVFDHQGYPRWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRSQRFAEIDRGAVMFVHLGFAASPDGTPGLGKSLNGADFDDSVLALLDPAIVAHWKTLKDYPQVVDTPTQAMVIDDGDALFDRHPEVERYDGEYVIRMIVDARDGQMGIGCVVNAIVWFNLLWLNRESVLSQLRAMEPSPKVLEAIRWMEHDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFEGQGRIPRHRLGSYNEPIAVTTAMDTAREEWVEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEALTAARDFWLLYNRTREAKKVEFLKAGKDHRGKRVANEQDASLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPITWESDRVRADYGHLNLDVVVEDTLVQMVGTTPNPASWLGIVDVPDGQYRLEHGLLATDDDSQALPRPTTVALPAVNGFEQRLKDITLKQQDRQKIEQELKLFQAQVGQRVTVKPVTYHNPKTRQDEPAAQVFLQGKSEPLCWISREHLSAVTRELTGILVSNGKYSLTAICTLPN
Ga0314861_0005952_292_612	F016632	GGA	LETLALVEVGSAIGFLAGWRNKVLKAKVNFFRQPNNRPSPFDKVLRGKAGRAVTRQDRLRLQLAEGLVQLIRKLVQYEAFRQLVRGLALAHSPMRQALSKKGGRPW
Ga0314861_0005952_6140_6349	F019075	GGA	LIAREIREERRRELDSMLSQIAHERTARLPAPPPPSLEAQFQRSIVTMREDVQRAKDVQSTYILRWLRS
Ga0314861_0005952_636_1079	F003859	AGGAG	MDPKPRSEGRSIANYLIPITSLYNSLKLGWQWRRLKWAVAAASEAAQGHEANGSRPGAQEFKTLYNEVARKVQDYSHESGSPIGILKAKLPALCAIERLANPDPVGPQSRLGLTLGVIIAAILGSIGMGALIGLATGMAHWIAHLFA
Ga0314861_0005952_95_295	F027079	AGGAGG	VIKAFLNLCLILFLDMLAYMVAFVAAFAVAWAAFWGARWILAALQKAVAALKARERKKEMYAHATR