Scaffold Ga0314861_0005619

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0005619
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10381
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0005619_296_781	F007097	AGGA	MSQLTLSSIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRAPAPGFVPGQAAPPAQATSQAGQLYNFPGGWDINDATGAVTLCTTYMASGTEVVNNDGIIKVYAVCLRLSLNSAN
Ga0314861_0005619_5318_5506	F016487	GGA	MISGNQTWTQALLQPQKQAYYIVEIPDFAIAIASFPASSPVAQSAISGGYGVTLYGVGGYGT
Ga0314861_0005619_7056_7577	F010661	N/A	MTNSNSIATAADFRKLAEESAFEEARRVVLPRSGLAVVLRRPTKFYWALRRSAWPRELREKLDLVTVGVRPELTAEETLLLVREDQQMLNEAFVDPKPCLDPGSKQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPGGEPGHPEGSGANGALVREDPERDVIPRGSSLAG
Ga0314861_0005619_8608_9162	F008672	N/A	MWTSYYNAGLSKQVVRQLLAVMKRDIQAALDFVSGAPGSYAPFAEYDLALLPVQQFPAILLTPDTVTFDEEANGTLHQMIRLTCAIAVTHQERNALAEMTQDYVRAARAVLDTLWESTPGDFMLSNLPLPSPPFPNGALSPGLASGKLTKLFADRHTFEEIRRGPQSGFVMAASMSVIVEIEES
Ga0314861_0005619_9353_9829	F011724	N/A	MGYCAVDDVCNAFPRFVRNAPGSIQDTDIQGWIDDRKARIRGAFLARLIDPDAMTLTTDQSNFLRALNRDGAIADLGDALQGNVALQPGEYSLAGSHRQSFERQIKEIKDGLYDALFSGIARHVEIEPLLGGIAGGETDHSTTFDRGEDKAFSKNQTF
Ga0314861_0005619_9914_10150	F042698	GGA	MPDLVTLNITGMTANATNAVPHGLPRTPRRVWFTGVGSAVNAAACSLDTSTVAAGFDGTNIYIYTPANVTSVLAHVEY