Scaffold Ga0314861_0004727

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0004727
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11796
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F011927	Metagenome / Metatranscriptome	285	Y
F014038	Metagenome / Metatranscriptome	266	Y
F016073	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0004727_2478_2720	F011927	AGGAG	MKRREGYKGYVIVARSHELRDGGFSAEFSIEEHDADGVLETEFYLPDTFPTQQSAIDAGIQAGRQKIDAGFERRSTRASA
Ga0314861_0004727_2988_3179	F000175	N/A	VDEARKRVIGVMAAILAARKLAQYDGGRRVPATVAAISDAVRWAEEIMKAIDERFPVAKTTPR
Ga0314861_0004727_4530_4856	F014038	GAG	MKVTQDAALSLLNKYVEERTPVFAALVTPSVSVVRVTGRIRISIADGVPRLVIGEDDNESDQIKFRLSNCVFEYGDFRGEEPYSHKWEGFLVVGSSRGDTLSLFEPKS
Ga0314861_0004727_5727_5951	F016073	GAG	MDDCSIGGKAEKLRQEIEVILLEERRYRSLKGHSLGENADHDKRQFRILAIREELRTLLEKARQQSSHGSVWYS