Scaffold Ga0314861_0002149

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0002149
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21893
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (54.17%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038046	Metagenome	166	Y
F050843	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0002149_14902_15324	F038046	GAGG	MTDQSTESFLPPSKRAARRILQRAFVLTGRDRPLRQHIREARFTILWLLEDWDLVWTIIVDRGKIEFARRPAKHPDLTLSWATAAEFFSSASSSFLPEGSLKLAENAELRRVASHLLNCFFRYLGHVLRNPVDGAGESLL
Ga0314861_0002149_20030_20566	F050843	GAGG	MINPRFAIGLAAILVSSAFSFAAEDTITLRAGSELDVEMITTLSSKANETGDMWTGKVVQPVFGNGGEIVPDGSTVDGHITFVNPPGQAKPKSKDKEKGDFLLIADSISMPDGTKYNVVASPQAAGGAQPQGQGTGDISAMASKFSTKKGKNVVIEPGTEVTFAFSRDITCTKVPVRR