NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0001572

Scaffold Ga0314861_0001572


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0001572 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28660
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F025427Metagenome / Metatranscriptome201Y
F027079Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0001572_27452_27901F003859AGGAGMNAQKIAMSEGVNITNYFLPVANLCKSLKLGWQWRRLRWAVAAASEAAQGHEANGVRPGAQEFKTLYNEAAKKVREYSHESGDPIDTLKAKLPALCAIERLANPDPVVPQNRLGLTLGIIIAALLGSIGMGALIGLASGMAHWIAHLFA
Ga0314861_0001572_27925_28245F016632GGALETFALVEVGSAIGFLASWRNKVLKAKVNFFRQPNNRPSPFDKAIRGKVGRAVTRQDRLRLQLADGLVQLIRKLVQYEAFRQVVRGLALAHSPMRQTLRKKGGRPW
Ga0314861_0001572_28242_28442F027079AGGAGGVIKAFLNLCLVLFLDMLAYMVAIVAAGAVAWAALCGAKWIFAVVQNAATALRGRWRKKEIYAHATR
Ga0314861_0001572_28429_28659F025427AGGAGMQPGELEKLLVSLETCPIQKKGLIWRLLKLYWRKLLFIALMLVLPGGLIVLFLCVTVWALNWEREMTAYLDATFRKW

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