Scaffold Ga0314861_0001572

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0001572
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28660
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0001572_27452_27901	F003859	AGGAG	MNAQKIAMSEGVNITNYFLPVANLCKSLKLGWQWRRLRWAVAAASEAAQGHEANGVRPGAQEFKTLYNEAAKKVREYSHESGDPIDTLKAKLPALCAIERLANPDPVVPQNRLGLTLGIIIAALLGSIGMGALIGLASGMAHWIAHLFA
Ga0314861_0001572_27925_28245	F016632	GGA	LETFALVEVGSAIGFLASWRNKVLKAKVNFFRQPNNRPSPFDKAIRGKVGRAVTRQDRLRLQLADGLVQLIRKLVQYEAFRQVVRGLALAHSPMRQTLRKKGGRPW
Ga0314861_0001572_28242_28442	F027079	AGGAGG	VIKAFLNLCLVLFLDMLAYMVAIVAAGAVAWAALCGAKWIFAVVQNAATALRGRWRKKEIYAHATR
Ga0314861_0001572_28429_28659	F025427	AGGAG	MQPGELEKLLVSLETCPIQKKGLIWRLLKLYWRKLLFIALMLVLPGGLIVLFLCVTVWALNWEREMTAYLDATFRKW