Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0001204 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0001204 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35256
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (86.49%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

35256

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (86.49%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F022139	Metagenome / Metatranscriptome	215	Y
F027097	Metagenome / Metatranscriptome	195	Y
F038963	Metagenome	164	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0001204_1575_2381	F022139	AGG	MRGQGNGKEDHGLSRVAAVTDSKRDPVVWSPELDAIIREGYARGCSGAREAINKIQGLHPKWRSHNIWGRAKELGFDQKYVQERPPWSAADDALLLDFAQEQSVKTIARLLHRSGATVRWRFAELGASSRVRDNYTQEELARDLRVSPKTVRRWEAAGFLERRDGRITHESLEEFCRKHASEINCDALDREMQCWLKDCAGFLPAQKQPKNGGGNLKHLQNIGVCPWCSRKTRGNAHGRHVKVCARKNGSGIVAECDLTRAEGPALRR
Ga0314861_0001204_3208_4170	F038963	GAGG	MARREADREARRIPWQRLQEARQQYVEWNAFSLWARAIAEAEGQVPAWLVKVLEERCSGLFGSDRTCEIAHQDPPLNRRILEWVESNALAQAKDEGWLRAVTFYAVRVPEYMRDCAYWQHCEAQWKRQHPSAYPSFEEWRKASEQCADEVLDAFEMAEDKRQIIKASRMVGPERLAAAVAQYMEWEAFTYWLRSPLESDTKFPDAVAEELQRRCPGFLESDEVLRSTLSPEDYTRRWKALLEWGANRFFSKMRKEGWFDAVVYEARAHPRSVRTVDYWVFYWDEHWSSDPHGAYPRLDDWRQAADNFVTEPGGEGATASL
Ga0314861_0001204_480_1091	F027097	GAGG	MSGDFGANPPVWIWQSEGSGTTVETDLLDAARRNWARVLSYARRYGQDSSIAADILEAVLLAISRARRASRMLGNPIRNLDSYLYVAFVRRLNRHVARQPKIQFVGSLQDLDAFSGIHARGTTSTVEDELLVRELLQYMTGRPRDMFFLRTSGYSWKEVARFLGTTANSAQVLFNKGIGTARSRIMKLKASTRWPSEGGEANA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0001204

Overview

Ecosystem & Geography

Associated Families

Sequences