Scaffold Ga0314861_0000883

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314861_0000883

Scaffold Ga0314861_0000883

Overview

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000883 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	43204
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (67.39%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043192	Metagenome	156	Y
F050841	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000883_14088_15644	F050841	GAG	MFKQMITMAVTAVLAGAFLTSCGSSNTKPPAVTGSLTTLVSDTPGLCDAVSFPFNVTDLALIGYTPTGAGAGTVPVNPSTASSPEIRINLTCLRDFTTVLSIGPANVGTYDIAYITLSEPQLIFYDPTILPPSPPTNTAQLTLNPLKKIQIPISPSLVISKGYASVMRIDFDMLNMIESITTDPATGKLLVTGTPEITMTPVAAAGSQGQGFGELDDLVGFVRSVTILPPGNTSLYKGSFNLQLLTASITGPPLVAVNLSSSTQLYGFSELNQVVTDDFMEVDAYIDVDGNFVATSVEDEYTEQPWNNILGLVGPVTSVSRDSNGNVTSFNLWARDVEPNDAAVVTLDTIPVVNVSSSTIYQYSSRSVNFANLPFGPNNITVGQEVVVHGQVTPPTGSSGSGAPTLPTTVAAAKVYDKLQSILGSFNTLVQAANDDKTGAFVFTPCSTLFQGVPTMVLTSNQTTFVNASGLSSLSGHGSSPNLTVKGLPFFEQQAQTINGVPVPAGTLVILAKQVHQR
Ga0314861_0000883_38382_38960	F043192	AGG	MRKISESLARAVLILVPLLMLPFPARARDPEFRALVERMSAYYQKRPMRFMGWSNFFANRFTPHGVSHFQMVIFDDIDSSRTPPAEEFESALAGLVGPSYQPFVRVHEVRDGEWTCIFTRESGKASFEMVIVSIDSSDAVLMKMQLEPGAMREWVDEPAKKARDSGHRPSDSRGSPTASAADADTHKCRQGS

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