Scaffold Ga0314861_0000864

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000864
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43653
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010144	Metagenome / Metatranscriptome	307	Y
F013851	Metagenome / Metatranscriptome	267	Y
F043192	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000864_26735_27124	F013851	GGA	MIEPTLLKLTQDLEWLGCELEYLGHKHALEGFPGSGPTWDLFREKQRGVLATADKIERELKNLVRFNPTPLVGVECPITETISSIAVLLGTVESIKQAAALAVHELPPLVRRFTKLVEGYFPAVANTSA
Ga0314861_0000864_41067_41600	F043192	AGG	MRNHSQFLAPAILSLALLQMLPAPARAEDQDFHLLVERMSDYYQKRPMRFMGWLNFFANRFTPQGVSHFQMAIFDDIDNSRTPPSEDLESSLASLVGPSYQPFVRVHDVRSGEWTCIYMRESGKTRVEMLIVSIDSSDAVLMKMQLKPDALREWVDEPVKKGRDSRYGAQEAEHGQP
Ga0314861_0000864_6921_7241	F010144	AGGAG	MSTYLSIVSGHLLKWAAIAAGAIYAGMVLMRYRTDGPNYRLSFELRSPARSLQHSVVWLGVKVFDACLRFAAAILNMLLEASAEVGEWFLRRSPTVQRSIRSRFLV