Scaffold Ga0314861_0000549

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000549
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58583
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (66.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022810	Metagenome / Metatranscriptome	212	Y
F046143	Metagenome / Metatranscriptome	151	Y
F058614	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000549_17_295	F058614	N/A	VAQGGSATIFLVGNGIVPGTVYSISGKPTDVTVVQPSGSQFGQTSDGTPSVTIDITVSANAVPGLRNIMVTNPATGELSVFVGGLLITSSGQ
Ga0314861_0000549_34046_34411	F046143	AGGAG	MRRNIRKLLGISGLSVALLLAAGIPGLAKNSRTVTLQHDAVLNGSSLAAGRYSIRWETHSPEATVEFVQHHKIVLSTEGRVEERVKKYDRNAVVYNIAPDGTMSLVEIRFGGSSKVLVFN
Ga0314861_0000549_37017_37376	F022810	GGAGG	MDIRKYLGTSILSVALLLASGYPGFAKNSRTIAFTHDVVLSGTTLPAGQYVVRWEAQSPRTTVEFARGNKTVFSTECRFEDRGKKYPSDMVVYLAASNGTMTISEIRFAGSSEVLVFNQ