Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000545 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000545 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58851
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (72.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

58851

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (72.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000275	Metagenome / Metatranscriptome	1391	Y
F005269	Metagenome / Metatranscriptome	406	Y
F012173	Metagenome / Metatranscriptome	283	Y
F013438	Metagenome / Metatranscriptome	271	Y
F088100	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000545_16974_17333	F000275	GGAG	MTAENRLSAPKRRTRAEVQQLVAEFVSSGMRRSEFCQSRGLSFSTLDRHLKKWRWKKRRRPISSAGRLVPVELAARKSPKQHEPSCGLAVVLPGGRRIEVHPDFDMSTFERLVGILERA
Ga0314861_0000545_22319_22561	F013438	GAGG	MNRLYQWLSRRARVFRSGRFGQGTNRTVRTEVTVQRDAVALLVGDAAVVGFDACPLCGSKLAPEQAEQARLRLPKGPLSA
Ga0314861_0000545_56636_57061	F088100	AGGAGG	MSAAVVTAIDTQSNDSTAAIRRYQDGYRVADGVVTFGQTVKLGGIFVGGVIFVAGLVEFILNPAEHHGFAVIFASLIACAVLLILISQALAMGLCGEGHLLKAALDSDVNSSPFLSNTQRAQAMSLRERPPVPTLLPVWTE
Ga0314861_0000545_6265_6867	F012173	N/A	MTAPLPPTLPLSAPIPGAVKKKRVLLVDTSQRKRELRAEVMRKLGMDVDCAADVAEARIWWRAALYDLVLINMGKGHDYRDKFCDDIRSATPPQRLAFLVGQPKYLADSPNADNETPVENADNGVAGDLKVAASADRGDLTQRWGILEASRRISAVRSASIARTQAMRALPAPPRDSEGRPSKPTSTPTSLDDLLREEMR
Ga0314861_0000545_7881_8270	F005269	GAG	MSPEIAFSASCSIRLQAPNGLSLTGNDLTASYAIIRHNIRTYQSAGVLAVVRGKQRAESELKKFQDSQDSTDRHEGWRYFIEKTDLPAGTDPVEATRRRQAELEGRESKALRETKTPNFLSPDPRRGDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000545

Overview

Ecosystem & Geography

Associated Families

Sequences