Scaffold Ga0314861_0000383

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000383
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72837
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (66.13%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F022840	Metagenome	212	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000383_17518_17913	F005112	AGGAG	MSLVAKYKLFWAASIAALCGLAFWKNSKSYPGKSRLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIVQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARMDRRRRRERASAA
Ga0314861_0000383_18092_18280	F039911	AGGAG	MKYTITVVLTVVAAVAGYFGIRRLTHKDLGFTPVKRYATKLAETLLHTEATAAQEAGAAPAA
Ga0314861_0000383_19371_19697	F002761	AGGAG	MTFTPSSTSSFTAGAVFWSMVWAGLSKLNELAMFFGFKRARPREAVLRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNVLMVVFVVPIWCRLSRLESQL
Ga0314861_0000383_19872_20126	F025427	AGAAGG	MKPGELEKLLASFKTCPVQKKGLAWRLLKLYRKKLLFIALLLLLPGGLIVLFFCLTAWKLNWEQEMTAYMDETYKKGRKDNGYD
Ga0314861_0000383_20113_20313	F027079	AGGAGG	VIKSFLNLSLLLFLDTLAYMVAIVAAAAVTWVAICGVRWIFAVVRNALVALWARQRKKGTCTHEAR
Ga0314861_0000383_20654_21112	F003859	AGGAG	MDELNAQKGTKCEGVRITDYLLPVTNLYKSIKLSWQWRRLRWAVAAASEAAQGHEANGVRPGSQELKTLYNALAKKVHEYSHESGDPIDTLKAKLPALCAIERLAHPDPVAPQSRLGLTLGIIIAAILGSIGMGALIGLGTGVAHWIAHLFA
Ga0314861_0000383_21269_21670	F028392	N/A	MIAVVHLPEALRNGNSALVKLAGKIDSFSLALQRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPRYRHFAGEGILDFSTDCVSGQLEPGDLGKPPQPKRGRLCRECCFFLGEPEEQLTEPTVGGIPKDLTPQA
Ga0314861_0000383_22468_25584	F057060	AGGAGG	MPNHPELYFTPELDTPHQKWSVLEDPEHPRLSLLYRHYRQPGEKPDVQRSFGISEVSPVLEYYAARAGVEYSRLSLGRQRVNFDAVLVLVQSRLGMEIPGDGRWYPVIPWVRDDGFCAVLMREPMPYDQACHLFGFDIPSAKPSVPKRIKRHLARGKTALFGSEAEVRQLNQYDCVHRVILADGVTSFETAIYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPTGQIKAHCLIWDVDYDLIVFDIKKELRAWNGQVYLSVLNELHASPANLDMQTASNLDLAKVRNGKLIQYLSQEFARDVFELMRDDERVKEEIGFYNPDGWVDEEGNQVEDENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIGFREPKDLMTVMPQELAGAGVRRYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGCRLQHFADIDRGAVMFVHLGFAAGPDGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQAVVTPTQAMLIDDGDDLFDRQPEVERYDVDYVTRMIRDARDGQMGIGCVVNAIVWFNLLWLNRESILAQLRAMEPSPKVLEAIRWMEHDLPKSQMPMIASRLEEIIDSIKMNGKSVEWASAAITEFRNTCPIAPKFWWQGGFEGQGRIPRHRLALYNEPIPVATAMDVAHAEWVELFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREVKKAEFLKAGQDHRGKPVANEQDASIAAYLFAEEDIHNRIKASGMYVEIYAELVKFIFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGAIRKYVPITWESGRVRADYGHVNLDVIVEDTLVRMVGSTPNPANWLGIVDVPDGQYRLEHGLLATEDEGEPAPQAATVALPAVNGFEQKLKDMTLKQQGRQRIEAELKLFQSRIGQRVTVKPVTYHNPKTRQDEPAAQVFLEGKSEPLCWVSREHLSAVTRELTGILVSNGKYSLTAICTLPN
Ga0314861_0000383_6071_6262	F022840	GGAGG	MQDKSITITIDEQGHSTLDLEGFAGRSCDKVFEDFRGGDRVKIERKKPTYYTGQQVQQKKSER