Scaffold Ga0314861_0000366

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000366
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75392
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (76.06%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003743	Metagenome	470	Y
F011989	Metagenome	284	Y
F022139	Metagenome / Metatranscriptome	215	Y
F027097	Metagenome / Metatranscriptome	195	Y
F027391	Metagenome	194	Y
F038963	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000366_10383_10772	F003743	AGGAGG	MFGQLQVTPMFRLSKLQTLDDAVAKLLEFTEFPKIVRWFQFPTALLVFLAPDEAPDCGAIYVYDRKRCVWLWVDFEDRNYGGYSPSQFDVLINQCYFFGLVESPGLLDSPVRWVVTPGQRPTVLGRLPV
Ga0314861_0000366_23863_24087	F027391	N/A	MPNACTQSEVRSTLKDYLKDRPELGLGKAVSDVALEPPNPFEPQAPRRPRKAFVLVVLCLLALLGVFVHFNLWS
Ga0314861_0000366_48249_49271	F038963	GAG	MVNTPKERTRRTSKAEARVSEVARREADRQARRIVWQRLLEARQQYVEWNAFGLWARAIVEAEGQVPPWLLKVVEERCPGILAFGLAGEMAYRDPAFNRRIMELVDANALSQAKDEGWLQAVTFYAVRDPAFARNCAYSQHCQAQWKRQPPSRYPSFEEWRRASEQCPDEILDAFEMTEDKRQIIKVSRTVGPERFAAAVAGYMEWEAFTYWVRSLLEFGAKFPDAVSKELQGRCPGFLECDEVLRSTVSPENYNRRWKALLEWGENRFFRQIQKEGYFDAVVHEARAHPRSVRTVDYWVFYWDEHWSSRSSETYPSFQEWRSAADNFVVGADDKRATAG
Ga0314861_0000366_49202_50047	F022139	AGG	MRGQGYRNEGYGLRGVTAVNDLKRDPVDWTPELDAILREGYARGWAGAREAINRIQTLHPKWRSYIVWKRAKELGLNQKSVQERPPWSAADDGLLRDFAQELSVKAIARLLHRSEWSVRWRFARLGESCKVRDNYSQEELARDLRVSPKTVRRWEEAGYLERRDGRITHESLEEFCRKHASEINYDALDREMQRWLREDVGFMPAEAQPKNGNGILRHLQKVGVCAWCGRKTRGNAHGRHLEACARKNASKKGLQASGSQPAVARLSSAPTTKLSAALRHS
Ga0314861_0000366_50370_50972	F027097	AGG	MPDDFKADPPVWIWPTGSGTAVEPDVLDVARRNWLRVLSYARSHGEDSSVAANIFESVLLATSRIRRSSEKSRNPIRNIDAYVYVGFVRKFNRYLAKQPKIQFVGSLQDVHSLHGIQTSRDAPTAEDKLLAKELLQQMSQRTRRTLYLRTNGYSWKETARFLKTTANSAQVLFNKEIGKLRSRIWKTKASEQRPEGEVDE
Ga0314861_0000366_8360_8557	F011989	GGAGG	VTPVGDIEIEIVFRIALRGRTSDLARLLEAFDKAEVVLIGIVAKPTAAEEQCQNGVKTTVGGFSE