Scaffold Ga0314861_0000362

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314861_0000362

Scaffold Ga0314861_0000362

Overview

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000362 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	76201
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (69.70%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020642	Metagenome / Metatranscriptome	222	Y
F039913	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000362_2447_2842	F039913	AGG	MAGLFLALTLLGLPSRTALQAQESRKSKVPVIDKIGSGGPSQQAFSGIFKSVDLRAEILNVDNINGKSTEVFPVKKKVHVVTADGDKLGLSNLKPGTNILVYYDQKGDRRTVTRIVVLAGAPEKKKPSPPS
Ga0314861_0000362_43104_43586	F020642	GGAGG	VNNHLSEDQIAEWLLGAKDEMALRHLEACHECSREAEQLRSAIAGFRDSIHAAAQRDQSFWRNPQHAIGERISGWYSMYWAWAVAMVLVLIAALFLMRAPRAPQNSASEDADNFLLQEVQGDLAREVPEALAPAALIAQERDEILSHQVIGQSQNLQKRR

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