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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000287 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 86627 |
| Total Scaffold Genes | 83 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (61.45%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000749 | Metagenome / Metatranscriptome | 908 | Y |
| F001102 | Metagenome / Metatranscriptome | 777 | Y |
| F002898 | Metagenome / Metatranscriptome | 522 | Y |
| F047844 | Metagenome / Metatranscriptome | 149 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000287_23951_24151 | F002898 | AGGAG | MPHDEKRSRFRIILDLLRRLFGKKPAPPGDPHAYVGAPLRRGPRGRSGAAVAEPEDDSFRAFPPRR |
| Ga0314861_0000287_39179_39436 | F001102 | AGGAG | MIPAVRKQVDAARLTADLAAARVELLSAQCAADRVRLQYSVPDIVTFADRHALEQAIASADALHRFFSQLGAQIKNEEDGGQRTQ |
| Ga0314861_0000287_82479_83897 | F047844 | AGGA | MALLLCLRTAAWAQETTEEPTPSLGDVARQNRAQHASAGEGAPSKAQALADDMQQEQEASEAAPTGFKSYDAGDYRLFVPFPFSLEGRDNGGPVLLGSSLGITNTEVLAGTPIPIPANLTDNDLMNMVRQYANLHGSYPYCSAIKQGPHKAFRCYWNGAPRLLGREVWGSMEVVVGSNSLIPVMCVSPDEFQCLNYDKFGYHTCNNKYPSWQEVQQTKTAIETRFRDERTTGQLCDQIIYPSIQLKEDIVVHPATISEGKPAQPAASPVPEDTSVAVGAQTTSLAELARQSRQAPRAKAQATLDNAEGASLAPAGFQSFSLQYCQNPQQCSEASAVIPEKAEVVSRVNGQHIFKTLLNGDPVLLYAGPADVNAPYRSLTDRDYIRMRDLANSNGWSREKTDGVSTQELTIAGRPALMTRFRYQRDEKTWWVGERALIEDRRGQFMVGCTAPEQRFADAETLCTTLVNSLRLP |
| Ga0314861_0000287_936_1217 | F000749 | AGGAG | MRNSGLSSKPTDATITIRVSGKLFQGHLSYLNQLVQSAADCRLWPLLSLSHLQELDRAALFYLMRGENRDFGIVSCPNFIREWMEHERERNAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |