Scaffold Ga0314861_0000270

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314861_0000270

Scaffold Ga0314861_0000270

Overview

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000270 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	90388
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (71.76%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001969	Metagenome / Metatranscriptome	609	Y
F028682	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000270_44349_44903	F028682	GGAGG	MRIILKVSSSNEYCDGGCEFALVDLTPELAALILERIATLRERKTLDPNIEETSYWAYFVACYFSPYASLAMDDQEVEGTCIALGDMLDNLQIEEKEVVTVPECFQVPSSQVAAVECEKMLVREDSIAFTAIPKHASFRVHTVEIPLPMLEAALAISPSATQARPPKNYALYRTTTAPRNRPHH
Ga0314861_0000270_7636_7893	F001969	N/A	MRNETNTKSEIIALLEGRTQVSLENIHQFILDLDERDYMEFLYPSDPDFGEELEARNAEAKEMLETLRDIEGTLRDLDRGKIKVQ

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