Scaffold Ga0314861_0000247

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000247
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93870
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (63.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007065	Metagenome / Metatranscriptome	358	Y
F075568	Metagenome / Metatranscriptome	118	Y
F080778	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000247_30646_30999	F080778	AGCAG	MAWQILNDATIDLASRIPTIPPDIYVSLRGAKDLIDLCKSHPKLADMTPATIDSREGFCVACCGSDIVGRIKCELRSVEDLLILKAMNELGSKDALKLQEKTMKAWQWTKPLTVTIR
Ga0314861_0000247_39644_40069	F007065	N/A	MAALSNQKLVAMLREQLNHEELETEVYARKVSETKHSIAKVLYSKLMRDSMQHSDVLNCAMGYLVTNQWETLAPIKESREELLRLMDMEEKALRLFTSASGQVTDPHLKTLLMMLALDEEQHYETLRYVLENFVNKKVITV
Ga0314861_0000247_46690_46980	F075568	GAG	LEEKEVVNLHRTLALGTVVLIFLLQIRTGYSIPPRPVTPPGFVGVMGPHGIIVLVGPLLVSPTGGYEREVIIPGHPPFYVSTEPGVTPQDIANIYG