Scaffold Ga0314861_0000221

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000221
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98825
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (59.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007851	Metagenome / Metatranscriptome	343	Y
F008989	Metagenome / Metatranscriptome	324	N
F042692	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000221_75527_75961	F007851	GGA	MLITAIKILIVIVLGFLFAYIYGLIEHGYIPPAEHLRLRFFNHFANYHITMFALFSALPIVVLVFLPNLLGVLVSLGLWTYLPFGEDIAWYHFSGTWPAPEDWTSWGGGYHIAGRWVPRWYLASAIVATLFYALAVSLALSRYP
Ga0314861_0000221_93262_93483	F042692	AGG	LDLRRKIDGIDVIANDNEIWFLQESRICWTTTEEVWSGSSRLGEMLHQRGYRVQPKRFPKKLRELILTISKSP
Ga0314861_0000221_98060_98470	F008989	GAG	MSNNAVLIRGLDRDTYNSVVAKAKQQGKNVGDLVNEALRQYMDQSPTESPDVFDTKKLVIAGSVLLSKSDILGLHKELGNFHLENSGELTFDKDVDREAFQKIERINNTGKLRVPSDVHHFALLKAGHVRGEVEKY