Scaffold Ga0314861_0000196

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000196
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104282
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (72.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002641	Metagenome / Metatranscriptome	540	Y
F032906	Metagenome / Metatranscriptome	178	Y
F050848	Metagenome / Metatranscriptome	144	Y
F083590	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000196_65725_66144	F083590	GGAGG	MALDELHARRLATVGKMFDAALDRMELILRSTEEGSESSRITPEQAQVARDKMATIRSRLQEGLRHFSVQLQKPEPKQMLAAELSTLWVILENARPERMKGYGREFAPQDRVEWENLIRALMHEIEQIRGIVLKGKVKV
Ga0314861_0000196_69522_70010	F050848	AGG	MVKSRKGTSGPALSLSPAYSTALAARMLILEEDCREIERSLDGFHGIMYEHAGEIPETSKGRIRAVLAEILAKVTAIRLDLGLQKQVVDLDRLIESRLSHIWVTLHESKTQSLRGYGAVPEGLREYMDPRVDEILGLYTRLREALHGARTEGKPERASNEVL
Ga0314861_0000196_82971_83333	F032906	AGGAG	MDSGYSTVRNLLYIVLVLTLLSIFANFYVASQLSRNSDELARMGLLLQKQMMGTALQQSEQLQMKMEQLNQDAAGIDAKLQKAQDSFVARMNVELPRIMDNYIKTRAPMVEKEVMKQVPR
Ga0314861_0000196_96240_96581	F002641	GAG	MATTPASPTAAAPRVAGKIIDMVVKVSVDATRALPLACALYAVENREGVWLCAYYGANRSVFDYLPQKDNEIDEAQLGIAFRHKRFIPKDQYQPAQWEEFKKEQFMTYGGHGE