Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000195 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000195 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	104789
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (69.23%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

104789

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (69.23%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F028065	Metagenome / Metatranscriptome	192	Y
F050841	Metagenome / Metatranscriptome	144	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000195_21261_22682	F050841	N/A	MNVTDLSLVGAASNGQTSVATTPINSASNAEPSIRINLTCLRDFTTVLNINTANVGTYENAYITLSEPQLTFFDPTILPPSFPINTAQLTMVPLRLTLVPINPPLVISKSAASVLQLDFDMLHMIQSITMDPTTGKILVSATPEITFTPVTAAGSQGQGFGEVDDLVGFVRSVTIPPPVSLTLYDGSFTLQLLSASTSSAPVLTVNLNSSSQLYGFSNLNQLYTDSFMEVDGYFDVDGNFVATSVEDEYTECVPPQIECTEQPTLAIIGPVTSLTRDSRGNVTSFNLWARDVEPNDATAVELDTIPTVNVSTSTIYQYSSRSVNFANLPFGPSNISVGQEVIVHGLVTAPKASSGSGAPTLPTIVTAYKVYDKLQSIQGGFSSLIQAAGDDKTGAFSFSPCPVMFQGTPAMVLTSSQTAFVNLTGLSALTTQGGNPTLLVKGLPFYEGQAQTIEGVAVPAGTLVILAKQVHRL
Ga0314861_0000195_5875_7062	F028065	GGAGG	MRKMCICLFVLGWLVFAGLLQAQQVCPGLPYVANTPEDELMQAVNGADKPEEQVAALDKYAQEHGDAKFMPCVDEYYTMVYLKLNNYDKVVEYGEKGLASNYKDVMLMLNLLKGYVASGKVADSAFDVINEAPAVITAESKPARPPGVSDADWQKALEDSAAQAKDELAYVVYAFLQLVPRVSDPNKRIEQLDRFAKTFPEDAAKSAPQINYDYFIAYKMANKPDKALEYGEKTIATDPNNLLAHNLLAYDYAIGRTNPDKATDYAKKAIELAQQMKKPEGVSDAQFKQEQDSQLGMAHLSLGYVDFTRAATSKSKKLGPAIDELKAAADLLAANPELQGQALYYLGYAYESGYPANHRGAMDALSKAASLQSSWKPQAEELLGKVKKAASQASE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000195

Overview

Ecosystem & Geography

Associated Families

Sequences