Scaffold Ga0314861_0000126

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000126
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129557
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (68.99%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009662	Metagenome / Metatranscriptome	314	Y
F043192	Metagenome	156	Y
F067338	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000126_13631_14035	F043192	GGA	MSAYYQKRPMRFMGWLNFLANRFTPVGVSHFQMVIFDGIDSSRTPPDESFLASLVGPSYQPFVRVQDVRDGEWTCIYTRESGETRVEMLIVSMDSTEAVLMKMQLKPEVLREWVDEPVKKARDSREEARQVEVN
Ga0314861_0000126_86036_86242	F009662	GAGG	MEFPVGPEEVKLIQGRSKGLQILCDCGCINFNYLDPQDPVWRCRNCQRVLSFDFPRLMEKVLKTVPSA
Ga0314861_0000126_95495_95734	F067338	N/A	MATKTTPNLSTVERLLDEVDEWCGRVQEIRQRLAPLPRGSEAYLDLLPDLEVELDTLRLKTQHALEALEEFDDSLPESE