Scaffold Ga0314861_0000125

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000125
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129940
• Total Scaffold Genes: 130
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (65.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F000214	Metagenome / Metatranscriptome	1570	Y
F000771	Metagenome / Metatranscriptome	897	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000125_114445_114792	F000132	AGGTGG	MLIEKLAAGVVQVQTPIGPRYLTASFIQRVYLLWMFRNFPILPHAVLSQRQQRLIDRMCSEQRFVSMLYAHAANDLPVIGTIEHRPPVGVDPLPPRRPVARETAGSLPAEVRQRS
Ga0314861_0000125_120059_120319	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMISDMAKPALATAVNGPQPTGRIPVPTTPIPAPQPVRAAGWEDTAKRWP
Ga0314861_0000125_42502_42759	F000771	GAGG	MKNLLAVLALALAFVAGAAVSAQVRDWHDLDAVHKHVVEAIHEMERARAANHYDMEGHGAKAEEHLRAAERELGLAVDAAKASAK