Scaffold Ga0314861_0000123

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000123
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130233
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (70.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001167	Metagenome / Metatranscriptome	758	Y
F051657	Metagenome	143	Y
F088108	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000123_31397_31615	F001167	GGAGG	MFQFSDLVRGGEMVREVKQKFPETGEVFEKFGLRPSCFDCSIEMAARKVGAPFDDLMVEVNKAIYKSRGVTA
Ga0314861_0000123_65199_65654	F088108	N/A	MRAFEAFLRELAADFIKQEVRRANDPLPDEEPPAPTPEQIRETPLFMVIRRLLRHADEDFTRPAFDAMTARARRDTRPYWEFARCRRARNMGVAISEINLPDDAWELEEKFWMRVDAAITEALKGRRRRPSKKRRGRAGYQAETPPCASSA
Ga0314861_0000123_76049_76261	F051657	N/A	MDSANTDPELRQWLCWAFESGKVPMFVRTVAEAALIACLPDYELLRPVLLELKRRYPEDLAHAVAKTGTA