Scaffold Ga0314861_0000122

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000122
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130315
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (67.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001116	Metagenome / Metatranscriptome	773	Y
F042243	Metagenome / Metatranscriptome	158	Y
F098496	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000122_13255_13437	F042243	N/A	MGRPKSFRNPRRVSLTLNRETIVVARRLARQVRRSLSEVISEILDSYFRQHSRSRPRGMV
Ga0314861_0000122_44463_44735	F098496	AGAAG	MDLAAFVKKYAELSKGSGGPVHLSAFGLSKIETEKVISAFDDDYQISRYMMLSREPDEDLASYPSDARVYSINGFEVSHVSLAPGIGKVV
Ga0314861_0000122_72231_72533	F001116	AGG	MTFLTTRYHLKRNLTAKDFERLHSLSTVYGIRGISFDGPLLVLEYDASRFDEAEVLAQVRQAGVPVDPEKPIAPGSFDYAGEFRDFAWPTRGLSPANRKG