Basic Information | |
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Taxon OID | 3300033977 Open in IMG/M |
Scaffold ID | Ga0314861_0000109 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 134904 |
Total Scaffold Genes | 128 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (57.03%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000595 | Metagenome / Metatranscriptome | 999 | Y |
F000978 | Metagenome / Metatranscriptome | 815 | Y |
F001431 | Metagenome / Metatranscriptome | 696 | Y |
F003120 | Metagenome / Metatranscriptome | 506 | Y |
F011701 | Metagenome / Metatranscriptome | 288 | Y |
F085010 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0314861_0000109_27190_27546 | F000595 | AGGAG | MEGITGLAAVIMFLGMFTAIPGMYTFYRVRKLRTEERLAAIQRGVSVPMEPDLSQAAHSRRYGILCIAGAVGYMLAFTIIARYEPDALMAAALGAIPFTLGLGFLIDSVLIRRDARAS |
Ga0314861_0000109_30152_30292 | F003120 | GGTGG | MAKRNVSFVATIKKPATVKFKTKSGKTVSFRAVKTVKKRVRFRAKR |
Ga0314861_0000109_45766_46098 | F000978 | AGGAG | MFCLRCRREIEIGHKSVAIYMFAQTVGVRPRQKSAAQRICFCPQCAVSLAMGLPPEGALNMAAWDMIRDLVSAEPSLNEAAWESLRGVVALLGSGDDEATAAQARFRRAG |
Ga0314861_0000109_68974_69165 | F085010 | AGGAGG | MTGTAVSLTLNEEESELIQEILEERHRTLLMEISHTDHHQFKIVLRKKAGVLESILNRFAVHA |
Ga0314861_0000109_76061_76318 | F001431 | GAG | MWSIQDVSAEELAKLFHHYRGALAHDFDCHNGEDGTSSWDRTPQSERKLMVAAARLALLELAAAPAQANGNRPYFAKPGEADWGC |
Ga0314861_0000109_96377_96895 | F011701 | N/A | VQCGSPRQEVLKSGRYKEDIIMKFLRANGARLLCTLLATLLLTNLAAMANSGRQFSGYFDVSDVNQQGDFVQVTLHLKLFNHSDADVRSVIVTLVDSVPAFTFRGNFQPVKVWKSQHFIEMSQEFTVSKREFRQWIQPPAQPNLVILYQDANGRTWQKGAQISRRPLVHVAE |
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