NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000109

Scaffold Ga0314861_0000109


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000109 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)134904
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (57.03%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000595Metagenome / Metatranscriptome999Y
F000978Metagenome / Metatranscriptome815Y
F001431Metagenome / Metatranscriptome696Y
F003120Metagenome / Metatranscriptome506Y
F011701Metagenome / Metatranscriptome288Y
F085010Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000109_27190_27546F000595AGGAGMEGITGLAAVIMFLGMFTAIPGMYTFYRVRKLRTEERLAAIQRGVSVPMEPDLSQAAHSRRYGILCIAGAVGYMLAFTIIARYEPDALMAAALGAIPFTLGLGFLIDSVLIRRDARAS
Ga0314861_0000109_30152_30292F003120GGTGGMAKRNVSFVATIKKPATVKFKTKSGKTVSFRAVKTVKKRVRFRAKR
Ga0314861_0000109_45766_46098F000978AGGAGMFCLRCRREIEIGHKSVAIYMFAQTVGVRPRQKSAAQRICFCPQCAVSLAMGLPPEGALNMAAWDMIRDLVSAEPSLNEAAWESLRGVVALLGSGDDEATAAQARFRRAG
Ga0314861_0000109_68974_69165F085010AGGAGGMTGTAVSLTLNEEESELIQEILEERHRTLLMEISHTDHHQFKIVLRKKAGVLESILNRFAVHA
Ga0314861_0000109_76061_76318F001431GAGMWSIQDVSAEELAKLFHHYRGALAHDFDCHNGEDGTSSWDRTPQSERKLMVAAARLALLELAAAPAQANGNRPYFAKPGEADWGC
Ga0314861_0000109_96377_96895F011701N/AVQCGSPRQEVLKSGRYKEDIIMKFLRANGARLLCTLLATLLLTNLAAMANSGRQFSGYFDVSDVNQQGDFVQVTLHLKLFNHSDADVRSVIVTLVDSVPAFTFRGNFQPVKVWKSQHFIEMSQEFTVSKREFRQWIQPPAQPNLVILYQDANGRTWQKGAQISRRPLVHVAE

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