Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000109 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000109 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	134904
Total Scaffold Genes	128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (57.03%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

134904

Total Scaffold Genes

128 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (57.03%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000595	Metagenome / Metatranscriptome	999	Y
F000978	Metagenome / Metatranscriptome	815	Y
F001431	Metagenome / Metatranscriptome	696	Y
F003120	Metagenome / Metatranscriptome	506	Y
F011701	Metagenome / Metatranscriptome	288	Y
F085010	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000109_27190_27546	F000595	AGGAG	MEGITGLAAVIMFLGMFTAIPGMYTFYRVRKLRTEERLAAIQRGVSVPMEPDLSQAAHSRRYGILCIAGAVGYMLAFTIIARYEPDALMAAALGAIPFTLGLGFLIDSVLIRRDARAS
Ga0314861_0000109_30152_30292	F003120	GGTGG	MAKRNVSFVATIKKPATVKFKTKSGKTVSFRAVKTVKKRVRFRAKR
Ga0314861_0000109_45766_46098	F000978	AGGAG	MFCLRCRREIEIGHKSVAIYMFAQTVGVRPRQKSAAQRICFCPQCAVSLAMGLPPEGALNMAAWDMIRDLVSAEPSLNEAAWESLRGVVALLGSGDDEATAAQARFRRAG
Ga0314861_0000109_68974_69165	F085010	AGGAGG	MTGTAVSLTLNEEESELIQEILEERHRTLLMEISHTDHHQFKIVLRKKAGVLESILNRFAVHA
Ga0314861_0000109_76061_76318	F001431	GAG	MWSIQDVSAEELAKLFHHYRGALAHDFDCHNGEDGTSSWDRTPQSERKLMVAAARLALLELAAAPAQANGNRPYFAKPGEADWGC
Ga0314861_0000109_96377_96895	F011701	N/A	VQCGSPRQEVLKSGRYKEDIIMKFLRANGARLLCTLLATLLLTNLAAMANSGRQFSGYFDVSDVNQQGDFVQVTLHLKLFNHSDADVRSVIVTLVDSVPAFTFRGNFQPVKVWKSQHFIEMSQEFTVSKREFRQWIQPPAQPNLVILYQDANGRTWQKGAQISRRPLVHVAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000109

Overview

Ecosystem & Geography

Associated Families

Sequences