Scaffold Ga0314861_0000040

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000040
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 205713
• Total Scaffold Genes: 181
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (67.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028063	Metagenome / Metatranscriptome	192	Y
F032122	Metagenome / Metatranscriptome	180	Y
F089695	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000040_154124_154639	F089695	AGGAG	MSRFILAALSVPLAVYSYIEIKTGLPLLTAQIPIHSGSTAPVGEVLRTGSYITRFLQLILSALLLGAPYVAADKIHLGSWCLGRYTPEEQERILPSLRELTGLLALLFSFYFSARIYLEIHDASSHGPLLPADWLKSVDRTEWELLAALAVVCVIIICLYVAKFDELADQD
Ga0314861_0000040_17732_18202	F028063	GGGGG	MKPPDHGVVSKRLMAIQFAILASLAAFYFLYLPYRTKSQAEAEAEERELKIEALFESLVVEDAHGEVELPGTGGKVRVHPQRLNRMPAVDEVVQALGLPDRRTTDFQSGLHMTWTGTAHSLEASFDRGRLYCLRREDLRTGHGVLVFESSVAWHPF
Ga0314861_0000040_72797_73114	F032122	AGG	MRKAWLFWVADYAAGIAAALGLGLVALLIVAWVNVFKSHVILGTTGTVLSALIIAMLVRAVPYVRKRADGLRQQEPEESLSGLLRELKQARTEREMREKLRGQRR