Scaffold Ga0314861_0000033

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000033
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 214195
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 136 (74.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029312	Metagenome / Metatranscriptome	188	Y
F031737	Metagenome / Metatranscriptome	181	Y
F078132	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000033_119800_120117	F031737	GAG	LPVPEKAPYLRTLTYVLRIVAGVALVALFLEAARRTTRDCTVGLFVYDICSWVWLREHLGLPASKLLRALFLELTGLTLTAGIYLTIRFVFPFWPHGANPKKEAR
Ga0314861_0000033_14079_14468	F029312	N/A	MSKGVEMDARLSTIRNLLYILIALVLLSSLAGFYVATELARNSDELASLQVLLQREVFKTALTHAQELETQLDSLNQSAAGIDDKLKKAQDDLVARMQVELPKILDDYVKQRGSLVQQKMQQRGIPVPH
Ga0314861_0000033_55460_55648	F078132	N/A	MLRELPPLLRRLKLPRSRSTKHLRNAAIEVLEALRAVLDETIEWLRKEGRSEAELKRIRVEG