Scaffold Ga0314861_0000031

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000031
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 224067
• Total Scaffold Genes: 199
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 143 (71.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003490	Metagenome / Metatranscriptome	483	Y
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000031_53774_54064	F003490	GGGGG	MDTTLALLVVWAVITIVFLALVFYRSRVTRKETDWIPLSDDAKEEQAIEAQKVTEKKGHKLDLPIRVLGWLSVIMLLVVAGYWIYHGIMTPPPISK
Ga0314861_0000031_83179_83655	F011724	GAGG	MSYCTVDDICTAFPRFVRNATGSVQDTQIQGWIDDRKARIRGAFLARLIDPDTMPLTGDQANFLRALNRDGAIADLGDALQSELTLQPSEYSLAGSHRQSFERQIKEIKDGLYDALFSGLARHVEIEPLLGGTAGGETDRSTAFERGENKAFSKNQVF
Ga0314861_0000031_83761_84318	F008672	N/A	MSWQSYYNAGLSKQVVRQLLAVVNRDIQAALDFVSGVPGSYAPFAEYDLALLPVQRFPAILLTPDTVIFDEEANGTLHQTMRLTCVIAVTHQDRNALAEMSQDYVRAVRAVLDTLWESAPGDFLLTNLPLPSPPFSSGALSPGLANGKLMKIFAEGHTFEEIRRRPQSSFAMAATMSIIVEIEEN
Ga0314861_0000031_85373_85894	F010661	GAGG	MGEPNGIATAADFRKLAEGAAWTDAERVQLPKSGLGVMLRRPTKFYWALRRSEWPRELREKLDLVGVGVRPELTPEETLLLVREDQQMLNEAFVDPKPCLHPGLAQFDPQWLPKEDAEFILKYLRGQVLANGQDLEAFRPSEQGHPAGSGRDGALVRENSERDFMPRRSGLAD
Ga0314861_0000031_87510_87692	F016487	GAG	MIQGNQTWQLALAQPQKQAFYLVEIPDFSIAITSFTASAQAATLPHGYGVILYGVGFYGT
Ga0314861_0000031_92271_92756	F007097	AGG	MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYADGNTIPTPIDPDDGYAYSRAECQFVWMIYSNRAPAPGFMPGQASPPALSASQPGQLYNFPGGWDVNDPTGLVSLRTTYWQNGNEVVNSDGIIKVYAVCLRLSLNSGN
Ga0314861_0000031_96446_96811	F021037	AGGAGG	MSHRYALSFYLAIALCLASCAWSSVPEAQVAQGLRASQATNFNVEGKINTLGQNKLTLNSEENMIFHVRWDDKTEFKSEDGSPASSKDLRVGLRIRVEGDLTESGEIVAQKIELLKTPPK