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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000030 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 224383 |
| Total Scaffold Genes | 181 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 123 (67.96%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005731 | Metagenome / Metatranscriptome | 391 | Y |
| F017950 | Metagenome / Metatranscriptome | 237 | Y |
| F019074 | Metagenome / Metatranscriptome | 231 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000030_215141_215806 | F005731 | AGG | MAVSSLAILLASLPAKAQGINGDCIFLVGSGFLCDLGDNYACPAVVKSAQGDSYEMGGAGTFSMESKSVTATGTFTHKSADGDTLETGIWIASELVSFNSYGIAPGALTRGGRPFGPPPFGPRRMPMLSGPTPAGGLAVFRISLLPVWGASKTALLQVNCALGKVPDEHQVEGIRLTFEAGDAKFDQEMGGRTMFLLARPGPGRVPQPSAPRVDPNRAPPG |
| Ga0314861_0000030_220772_221392 | F017950 | AGGAG | MKTNLTTLAVICLVSAVWARSSGSPQKAAPDQLPTGPLFSAEELSKGFSNHQFTPFGDAKFSLEILVPAGWESHLSDYDPGQISHDSEAPVPMIEFYPPGADDLGVNVQYMRVPGEKAVSAFLDEFAKSANGTIAARQQLDFEGHKVEDVLMKTNDDSLGPVLNRVMAFRRGDIVFISTAWSVEEKYEKYKKVFATVLASFNPTGK |
| Ga0314861_0000030_52226_52759 | F019074 | AGGGGG | MSARQGGSKTLRLKPLWQVIVVVCGMVATTSMPYSQEGQSAPKPPAAKPAAKANALPQLWKSTSTGREYRVKIDGDRFTAEWSNIPVLAAKQGAYIRSECRRSGARWVGTSHILLPCAPPDGKMKMCPMTLRFEVDHISPDRITGGGEILRDFDCGSCEVRKTGWGPFSWTPKSSDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |