NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000027

Scaffold Ga0314861_0000027


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000027 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)229809
Total Scaffold Genes216 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)125 (57.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000218Metagenome / Metatranscriptome1552Y
F005270Metagenome / Metatranscriptome406Y
F005402Metagenome / Metatranscriptome402Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000027_1086_1256F000218GAGGVERVLDRILGLGLFLIPIVAIVVGGVIALVAMFHRHQERLAKIERGINPDGPWPQK
Ga0314861_0000027_138877_139104F005270GGAGGMKRQFDSAPAAELSREDLASVVSALEPDQLFSEKQLHHCPRRHLTATEMILFWALRIYLVFMFGVVIYQIWTGAR
Ga0314861_0000027_171804_172466F005402N/AMKKYHIDRIISIATLVASLVAIVLVLKRPAPVAQPQTPAAIAEHAQSFDQKMAQFQQATQARESGSPDTAKPEAGQTASSAGQNPKAEVRINSDEITAVLAQALGTAGTSGLTPNSDVGSGAPVIKDQQVSFDGDLVHGQFLTQIAGEDVWITISGHIGEKDGYATFDPTEFKVGDLNVPVSLVNPALQKKLGEERDRLKLPDNVGGVKIEHGELVMQQK
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