Basic Information | |
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Taxon OID | 3300033977 Open in IMG/M |
Scaffold ID | Ga0314861_0000026 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 231134 |
Total Scaffold Genes | 225 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 165 (73.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007238 | Metagenome / Metatranscriptome | 355 | Y |
F009115 | Metagenome / Metatranscriptome | 322 | Y |
F030643 | Metagenome / Metatranscriptome | 184 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0314861_0000026_119389_120870 | F030643 | N/A | MNKENVLGRMEDGSQSLLVRNYKQVIKDRSLSQNAKLKSGNKGCSLKGKLHASISLVFLVMLLPVGVQAQITSPAALGPAQPQVYGSAVQTPLQYAGEAARANQLSLSMGASTFYDDNVFGMNSDRVSDEAASFEPHLALLRQTENLTITFDYLPYFLLYRRFDQYDRLNHNADLKLIYRLSSHLFLGLDDTFSYQNGLFQSQTEQQIMSGLLSPTALNQMIVPYTIRTLSNLGALDLTYMKSRRTSVTLTGGYTQRKFESQVAAGQPLYSSRGMSGSLRFQYAVTDHTRFGLLLLHQDTTYLGGEVFGNEQRFQIESVLPSVGSRLSPTVTVMAYGGAQYVRTFGQSSGGNSVAGRFESSGGGSITKEVRKTALNLSLQRIVSDSGGLLTSVIYTNATLGVRRQLVGRWEANFQAAAARADTSLFQSARERIDALTGLFRLDRPLSRGSVFHISYDTGHQLSKGNLQIGMPFDRNRVTVGFDYQLKAFPLGR |
Ga0314861_0000026_147908_148105 | F009115 | AGGAGG | MSIATDAAKQVIRDKVAAEIETAVAKLMTLKAEAETAKADFETKAITELVTKQHEILHKLRASKK |
Ga0314861_0000026_170502_170696 | F007238 | AGGAG | MISVTLIGPDKARSIVEISAETTVRDVATSNYHLFRRSTKRNGISVIPFTTEVADGDTVTVESK |
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