Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000018 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000018 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	257167
Total Scaffold Genes	226 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	136 (60.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

257167

Total Scaffold Genes

226 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

136 (60.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000279	Metagenome / Metatranscriptome	1383	Y
F000602	Metagenome / Metatranscriptome	995	Y
F000867	Metagenome / Metatranscriptome	854	Y
F005007	Metagenome / Metatranscriptome	415	Y
F019184	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000018_163405_163611	F019184	AGGAG	MATKYRVVKVKGVKPETFIVVGIDFAASAITSTSEAMSEAAMRSYLQKAGASANEINTWLEQARKYPG
Ga0314861_0000018_169661_170002	F000602	GAG	MALPAVALVSNFTRTTRAAMAAYVVARTPVLFGVAAALLYRGSRQDVYNILWAVVFGFATLNILSLAARRFEPGRRGLSFGELMAVLVVLVSLFLLGWEMLTLFHIFPIKLKR
Ga0314861_0000018_205506_206054	F000279	GGAG	MTQNNDNGMMEEIVLPEHLLPLESVLGQGVSALDLCMVLARIFRVQYSEVALLRLDKGLLHFIFPEHLRTTGAIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPGTTDSEEAPPAPIQKLMSVPIIDRATNVVGVIQISRKGLDPKYAADFSREDLHDLEVAAGLLATAPAVLQN
Ga0314861_0000018_66934_67530	F000867	N/A	MRKKSILCLAGLLFLLSCSPRDFLTRRLAADLIADSDAFKRPQQFVLQTGVVSNKDYVSPEYLVLQHHGWITATTATCPPGLVPPPCWDILLTPLGVDTVRALVPAQEADKASFAIPVARRELLGVTGISKEGNAADVDFTWRWIPLNEIGAALYSSDLHYKSTVTFRNYDDGWRIVESSPRSTQTLDDALKNAEPVL
Ga0314861_0000018_81977_82186	F005007	GGAGG	MTIPVRGTAALATAAVIVAATLIWLPAYRWFFAISVGFGLVVAGALYLWHKLRPVREEDIEKKRPLGLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000018

Overview

Ecosystem & Geography

Associated Families

Sequences