Scaffold Ga0314861_0000013

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314861_0000013

Scaffold Ga0314861_0000013

Overview

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000013 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	307593
Total Scaffold Genes	288 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	203 (70.49%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028686	Metagenome / Metatranscriptome	190	Y
F032905	Metagenome / Metatranscriptome	178	Y
F037542	Metagenome / Metatranscriptome	167	Y
F049363	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000013_237735_238562	F049363	AGGAG	MAEATDPRKQTRLPDTPSATVRQRWRELLDLSYATRRVTQQEIEPGVHAVVVPAVCRNAARQDLIEVEARAATRQVPEMARGVRLALERLSEFTLPLPANYHDWIGARGQDIMAGDTRVTAFIDLAYLEAALLARLWESGVLVEFGSPLAFFRRGALTDYANVYEAVVAMVFEGRSLADTADRLAPEILKRLQLYANAYLRLSSLYAEAAWHIDRDTFVMKVPRTHLSLALQYWELRADHAAVQKVLKGWRTRIEDLLQQQASRAGYEFPRTFAA
Ga0314861_0000013_262302_262469	F037542	N/A	MTRHAFGLLLELRARRNAPRLLSQAIAYLELLVREKEVDATPILLSVRVAQLRKS
Ga0314861_0000013_3550_3816	F032905	N/A	VPFGQKVWVDMLKTALRVVTLVLCAIIGLWAVGHGIALVAMFRASSHEDMLQYLLEVSVLIAGGVCVLSVAVEQLYCWRTHHKDGGLI
Ga0314861_0000013_50925_51170	F028686	AGGAG	MQDKLFKAATIVIPDVANRLVLEEAFNQWSEETKPSSILHVHYYHDMEAHTRGYQVVYEEPWMPYSQPETPKEEETAHLVI

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