Scaffold Ga0326769_020137

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326769_020137

Scaffold Ga0326769_020137

Overview

Basic Information
Taxon OID	3300033894 Open in IMG/M
Scaffold ID	Ga0326769_020137 Open in IMG/M
Source Dataset Name	Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1317
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.7535	Long. (^o)	-110.7249	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326769_020137_469_1062	F038745	N/A	MDRAVVVVCGELMQISLAFSAYYPLCLGGPPCAYAEAVERLIRRAASARGAEELLEAINGRVRLEGLGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLGRRRRVDGRDLAFALCLWAQKKRREDPRNPLWRAAELEPDRLYTEEEARKALEVEEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
Ga0326769_020137_47_415	F051572	GAGG	MSRGRAYGGPLAEVWTFADVVLKGGCKKSVQFLNTRLDLCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGQDRERIRNALLKKAGETLAQLRRELGDKTPAEALLAKLAELFLKELEA

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