Scaffold Ga0326769_002090

Overview

Basic Information

• Taxon OID: 3300033894
• Scaffold ID: Ga0326769_002090
• Source Dataset Name: Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6756
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7535
  • Long. (^o): -110.7249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040649	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326769_002090_2897_3319	F040649	AGGAGG	MRKLNIDHPARLFAQLRAIADASDPEEYPPLEYYLQVAEIELPDGSPATGDWLLAIEVLELADDLVQHAEGSGATRRSFRLVYLAPLETYFWGEYQWRDPVGFTIRVRWHRIPKDYNPQLDQIRQRNTDRRCSADASDSE